I have a Windows 2003 Server (Small Business Server). Service Pack 1
has not been installed.

I installed I folder 2.1.3 and have noticed that
on the servername/ifolder page all links but the login
are showing the correct url, ie http://realservername.domain.com..etc

however the login reference shows my local domain machine name, ie

So, if I am outside of my firewall this link fails because of it.
I know there are registry settings for the servers and I have
changed them to the correct settings (also rebooted server).

Is there some other setting that I need to make in order for
this to work?

i also noticed that on any new client install it refers to this
domain.local servername. Where is the initial entry coming from?
I can change the name and the client connects fine.