We have a process where we "Pack" a person's personality with the Desktop
DNA software, creating a .DNA file on our network. After reimaging, we
"Unpack' their file back on the PC, again, using DDNA. What I've found is
that at the end of that process, the
HKLM\Software\Microsoft\Windows\CurrentVersion\Run key and any other sub
keys are getting deleted. I have a Registry Monitor capture proving it's
the DDNA software but I don't know why it would be doing so.

Any advice where to look?