OES2 SP1 - I created a Virtual Host, installed a Forum written in PHP and it runs fine. iManager was working OK after the installation

I applied the last lot of patches and suddenly iManager stopped working.

Then I installed an application written in perl, uploaded all the files to the cgi-bin folder, set the ScriptAlias in the Virtual Host file and instead of running setup.cgi, the browser tried to edit the script with gedit.

I don't see any entires in the log files.

Any suggestions would be helpful.